Customers
What central analytics teams report back.
Labs across pharmaceutical QC, industrial chemicals, biotechnology, flavour and fragrance, drug discovery and academic environmental research, in their own words.
The consensus
Three themes customers consistently mentioned.
Read the stories below and the same arguments keep surfacing, from labs that have nothing else in common.
Your data never leaves
For regulated industries this is the precondition, not a feature. mzmine runs behind the firewall, so IP protection and compliance stop being a procurement obstacle.
Processing stopped being the bottleneck
The phrase recurs almost verbatim across three of these quotes. What used to be weeks between acquisition and interpretation becomes hours.
One workflow, many modalities
Teams running LC-MS, GC-MS and imaging side by side stopped maintaining three separate toolchains and three separate sets of expertise.
In their own words
Every quote, unedited.

“As a central analytics department, we analyze a wide variety of highly complex samples. mzmine PRO has become an important part of our analytical toolbox because it allows us to keep all data fully within our internal environment, ensuring the highest levels of data security, IP protection, and regulatory compliance. With ongoing improvements and a non disruptive update approach, mzmine PRO provides a stable platform that meets our current research needs.”


“Merck KGaA in Darmstadt is home to a Central Analytics department working with highly complex LC-UV-HRMS data. Much of this work revolves around Extractables and Leachables studies, where large numbers of samples need to be processed quickly, consistently, and with a link between UV and MS information. That combination used to be a real bottleneck. mzmine PRO gave us a way out. Today we run semi-automated standardized workflows across more than 200 files and multiple acquisition modes, with UV and MS features correlated and aligned in a fraction of the time it used to take. The open vendor format, integrated library management system and interactive dashboard have made mzmine PRO an indispensable part of our analytical toolbox.”


“As part of the R&D scent team at IFF, working with complex and diverse natural product extracts, efficient data processing, deconvolution, annotation, chemometrics, and interactive visualization are crucial for high-throughput understanding. mzmine Pro has provided us with not only a powerful and efficient GC-MS workflow to investigate volatile compounds but also a highly advanced LC-MS workflow, perfectly aligned with our aspirations. These tools are essential for enhancing our work, fostering innovation, and deepening our understanding of complex natural matrices.”


“At Novonesis, a global leader in biotechnology, we have been leveraging mzmine PRO for semi-automated processing of both high- and low-resolution mass spectrometry data across a wide range of research applications. The platform’s speed, flexibility, and intuitive interface have significantly enhanced our analytical workflows. Our collaboration with the mzio development team has been exceptionally agile, with rapid turnaround from concept to implementation, enabling us to accelerate innovation and streamline critical processes.”


“My lab develops and applies bioanalytical tools to determine the role of small molecules in complex ecosystems. Mass Spectrometry is our tool of choice to profile large environmental studies, often exceeding 1000 samples per study. With mzmine, we can analyze the vast amount of data in less than an hour, giving us time to focus on the actual biology. Our current processing record of ultra-complex dissolved organic matter samples is more than 8000 samples in 45 min.”


“As part of our drug discovery workflow, we analyze hundreds of complex fungal samples every week. mzmine PRO provides the necessary processing power and innovative compound discovery tools, such as library generation, interactive molecular networking, and database search to swiftly accelerate our daily routine. Data processing is no longer a bottleneck.”

Throughput
One file in under a second.
That is the unit that matters, because everything else multiplies out from it. At that rate a thousand-sample cohort stops being an overnight job and becomes something you rerun when a parameter looks wrong, which is what actually changes how a lab works.
Environmental studies
Petras' lab at UC Riverside reports more than 8,000 samples in 45 minutes.
Screening campaigns
Hundreds of complex fungal extracts every week.
E&L studies
More than 200 files across multiple acquisition modes, correlated.
By domain
Find the workflow closest to yours.

Metabolomics
Untargeted profiling at cohort scale, with molecular networking and library matching that survives thousands of samples.
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Lipidomics
Rule-based lipid annotation following LSI guidelines, including retention time analysis and a dedicated dashboard for QC.
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MS Imaging
On-tissue MS2 with SIMSEF, ion image co-registration and MALDI-TIMS workflows for spatial molecular maps.
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PFAS & Polymers
Homologous-series detection, Kendrick mass defect analysis and suspect screening in one workflow.
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Drug Discovery
Natural-product dereplication, library generation and interactive molecular networking across hundreds of extracts a week.
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Impurity Analysis
Extractables & leachables at scale, with UV and MS traces correlated and aligned across hundreds of files and multiple acquisition modes.
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Curious whether it holds up on your data?
Send us a few representative files and we will build the workflow and show you the result. That is a better answer than anything on this page.